- Explosives. Drop large explosives deep into the lake periodically. It may kill a lot of life, but if you need to stir up organic matter at the bottom, it’s more efficient than attempting to stir it.
- Migrate life from similar depths at other lakes. If it’s going to die if you don’t, maybe it’s worth the effort.
- Drill. Just drill a deep hole until you get to a water source or heat.
I wonder if there is oil and gas at the bottom of any of these deep lakes? /s
It would be interesting to know the gas balances for these lakes, in particular how reduced mixing affects methanotrophy and methanogenesis. If its talking about climate change, this article really should discuss methane, I think that's a bigger deal.